NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153805_1003017

Scaffold Ga0153805_1003017


Overview

Basic Information
Taxon OID3300012013 Open in IMG/M
Scaffold IDGa0153805_1003017 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface Ice
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3121
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.844722Long. (o)-79.573889Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004132Metagenome / Metatranscriptome451Y
F008305Metagenome / Metatranscriptome335Y
F019320Metagenome / Metatranscriptome230N

Sequences

Protein IDFamilyRBSSequence
Ga0153805_10030171F004132N/ALHFPNHPDIIVLTEKEPLMSEAMTQEQLSVPYNPNLLVTYKAIPETYAAPESPTFMTDKVTQIEWDLHNGRNNAVIAAERRADIEMFEEQIPEWYDPNYSKEDVLKALAQHFGINPMKQMSVYGTVTFSGTINIPISEIEDFDLSNVTIDAEVSSYDYDGDFTVDDVSIEEN*
Ga0153805_10030175F008305AGGAGMLGYTYKDIQNFGNSLTWAIDTAKNQGDEQNYKQLLIVWDFFEGLLGEGYIDENTYYG*
Ga0153805_10030176F019320GAGMHTLHWIATKAKDRQEAFDIVTVSLMPNEDGNRMADWSDWHVVGGGRWSDSAYENSSDMIISYAEKPDEFKKTIEGIKRYRINYMNDKLIKLDNAFDNLKSDVVDYISNDCKLNGKRQFDFSRWEITEAIDMINSKWTCDSSFFDHNEFTSSLEYLEERLDKPEEAALHYLVPVDFHF*
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Institute for Fundamental Biomedical Research
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