Scaffold Ga0153801_1000231

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153801_1000231

Scaffold Ga0153801_1000231

Overview

Basic Information
Taxon OID	3300012017 Open in IMG/M
Scaffold ID	Ga0153801_1000231 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	14411
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (56.52%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location Name	Ontario, Canada
Coordinates	Lat. (^o)	42.6244481	Long. (^o)	-80.9227115	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017592	Metagenome	239	Y
F019944	Metagenome	226	Y
F032530	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153801_10002312	F032530	AGGAG	MSDTKEMVLLVSNLLVQQAIESRARKPESIWLAHSFEEAEANANLFAKTQLPMTDPERKRNLIRAYDRVKQSRETYHV*
Ga0153801_10002313	F017592	GGAG	MYDDGDYGGIDEFMYWVTIVILFLMTTVFLGAVAGFMYWAMI*
Ga0153801_10002314	F019944	N/A	MNSEEDEFRRIEREALRLWAAQTDDDDTQVYAKPWQGLTWEDMPEEYAGDSNFLSGARWAETRLKEKNT*

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