NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153801_1040879

Scaffold Ga0153801_1040879


Overview

Basic Information
Taxon OID3300012017 Open in IMG/M
Scaffold IDGa0153801_1040879 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)819
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.6244481Long. (o)-80.9227115Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049614Metagenome / Metatranscriptome146N
F074551Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0153801_10408791F049614GGAMTNSRMKGKNGELDACRALEKLFPFKWERTAQRYGKGKADIEAQCSWQIHVEVKRRKSGYSYVYGRLKSDNLIVSGSLLICRLSKLRTVMDDGVCLPNVAPRCAGLEDAMLQARTDARVGWLPIVLARQDDEEWLLAWREEVDTRLMEEVRTWLDGNTKPI*
Ga0153801_10408792F074551AGGAGMSQPQSLEDQILQQVLVIQALRLKIARMESIYTTPRTIRSTGQNGTTEDTRHQRDTIEEYGPITPRCVTDKEVEQAEDDGA*
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