Scaffold Ga0119867_1007718

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119867_1007718

Scaffold Ga0119867_1007718

Overview

Basic Information
Taxon OID	3300012018 Open in IMG/M
Scaffold ID	Ga0119867_1007718 Open in IMG/M
Source Dataset Name	Activated sludge microbial communities from Shanghai, China - membrane bioreactor - Activated sludge (MBR)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Tongji University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3851
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → EBPR podovirus 2	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Activated Sludge Microbial Communities From Shanghai, China

Source Dataset Sampling Location
Location Name	China: Quyang, Shanghai
Coordinates	Lat. (^o)	31.3	Long. (^o)	121.5	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027486	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119867_10077188	F027486	GGA	MSDKNKICRSFRHDFPEFVSRAEALGVRISLGEGRRNGRERVFWLDGYRQLTGYTTKSDGSPFRHEDAVRNIDKALTGIEDDRKIMAGLTVAERFSRVLAEFREMKPQARMIGEVRLPGGDGGHCFFMADYDGGVHLHGFGQDVARGKAEWRHGETMAAQIGRFCDALEADFQKRQAEEVA*

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