NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119867_1018038

Scaffold Ga0119867_1018038


Overview

Basic Information
Taxon OID3300012018 Open in IMG/M
Scaffold IDGa0119867_1018038 Open in IMG/M
Source Dataset NameActivated sludge microbial communities from Shanghai, China - membrane bioreactor - Activated sludge (MBR)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterTongji University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2185
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Activated Sludge Microbial Communities From Shanghai, China

Source Dataset Sampling Location
Location NameChina: Quyang, Shanghai
CoordinatesLat. (o)31.3Long. (o)121.5Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034393Metagenome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0119867_10180382F034393N/AMTETLLYACKIGQPNYMEEILYECKGYVNKDDLMKKGQEWAEKNGYDRLRISVVDLSTPPNFKKTVKI*
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