Scaffold Ga0119867_1166848

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119867_1166848

Scaffold Ga0119867_1166848

Overview

Basic Information
Taxon OID	3300012018 Open in IMG/M
Scaffold ID	Ga0119867_1166848 Open in IMG/M
Source Dataset Name	Activated sludge microbial communities from Shanghai, China - membrane bioreactor - Activated sludge (MBR)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Tongji University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	585
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Activated Sludge Microbial Communities From Shanghai, China

Source Dataset Sampling Location
Location Name	China: Quyang, Shanghai
Coordinates	Lat. (^o)	31.3	Long. (^o)	121.5	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055534	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119867_11668482	F055534	AGGA	MRNLYNDEEREAARILDLVRIGGDVPESAVTWALWVLGDLVGMNNA*

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