NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120139_1108159

Scaffold Ga0120139_1108159


Overview

Basic Information
Taxon OID3300012019 Open in IMG/M
Scaffold IDGa0120139_1108159 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A7_5cm_12M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)703
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).05
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043805Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0120139_11081591F043805GAGVNAIVLFGDVIRSRRNAAGSTTWLRALTAELEATSPPGTLLAPFEFTQGDELQGLLAPGADSLDAVLRASFNPDRSPMRWVIVAGEVDPGSGPATQRTGPAFLRARERLAEAGARRDNLLMSSGDPATDALLDRLAPILAEMLGDLTKRQMVIGPLLVIEGPISPSFIVDFAKAHEAAGFDMALVGYPTSSAEGFLE*
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