NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136559_1023779

Scaffold Ga0136559_1023779


Overview

Basic Information
Taxon OID3300012037 Open in IMG/M
Scaffold IDGa0136559_1023779 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #496
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1563
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002402Metagenome563Y
F014810Metagenome260Y
F045453Metagenome153N

Sequences

Protein IDFamilyRBSSequence
Ga0136559_10237791F002402N/AMYYKGTKTKCEDYNTKVTLGENYQGSTNSWANVISNQNGQGFAILKHENYESEMTLIDKIPDSWYNNLEI*
Ga0136559_10237793F014810N/AMSIFSDNLGIIITGITGAIGGIAAFFGGKKSRESNANLEIGKAYELMAKQNNAFIEIMTTKFDEQTKKIEHLEGEVNGLRTENKQLLDELKKYRK*
Ga0136559_10237795F045453N/AMVRYKTFLLIVLLFGCKAKETTVERTQTSDTLISKSFEYVSKPIETKYTFSIECDSLGNVKEIQTFESSGLNSASVKLKNNQLDLRLLTGISERKTD
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