NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0136559_1072384

Scaffold Ga0136559_1072384


Overview

Basic Information
Taxon OID3300012037 Open in IMG/M
Scaffold IDGa0136559_1072384 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #496
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)905
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012504Metagenome280Y
F047500Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0136559_10723841F047500N/AMNITLDLSKAQLSKLRNGHGIRISPAMFGSGTDLIIDPMTYHNMAKKLDKGKGAVITMGSNEIEMNKISGTGLFAGAGNKSGKISRIRKAKKWRDFSVDTAKQGIDTAKYGFDKYQEAVNPLKSKFKKLFGGELESESEEEMEVEGGKISFKGIKKAYNKNVKNTKLGKALRDSAGMAIGDVYDKAGKELDKNKYGKPISQYMKDKKGSNVKRLTE
Ga0136559_10723842F012504N/ASLIDFKGWLKKPYYYVNCSRVPMEQQKAYRSLQIKGTNSSSLAMDYVIFALYEKNFKLDVISGNVEKLD*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.