NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136627_1000612

Scaffold Ga0136627_1000612


Overview

Basic Information
Taxon OID3300012042 Open in IMG/M
Scaffold IDGa0136627_1000612 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ489 (22.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13659
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.0853Long. (o)163.8049Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006538Metagenome370Y
F011917Metagenome / Metatranscriptome285Y
F091338Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0136627_10006124F091338AGGVAGREPEVHHAAPRCLVSLHERANGTTLDGEGIQAWLEWEWEATRWRVPVEISRQELEALVESSGVVLERKAHRLIHGDDWRRWGARGGRETFRRYGADWFSLLALRRWGRLTPEELEAARVLR*
Ga0136627_10006126F006538GGAGGMACELCGGGDAWIKTCVTSEGSRLLVCDPCYGEYGTELTIVPGDRLVTARCDLCGAYGNPRGFSDVRLGGRKGSYSGTCQACAEEAS*
Ga0136627_10006127F011917AGGAMLDRAPLNTSITTLLDHLTRHYGEGAELDTYVICARVKSPDMPGGAGINWIVGPNGHERVGGLLQEVLKAVEGDGPGRS*
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