NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136623_10001487

Scaffold Ga0136623_10001487


Overview

Basic Information
Taxon OID3300012045 Open in IMG/M
Scaffold IDGa0136623_10001487 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8064
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.078Long. (o)163.7214Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020164Metagenome225Y
F102649Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0136623_100014874F020164GGAGGLAGYLPKEWNGKRVAVRFARGRGFDARLVSDNAGGITVEPIKEDAEEEDARSAFVPWSAVRYVQLLEEPSEPQKARPKRTAAKKPEDPAP*
Ga0136623_100014879F102649GGCGGVVVGPGQSHCYAHDPERSQERRRNASRGGRSKGQGELGDLKKQIKDLAAAVLDGTADRGRAAVANQLYNTLIRAIEQERKMRELGELAERLEALEEVLKGRKTG*

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