NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0154007_1000210

Scaffold Ga0154007_1000210


Overview

Basic Information
Taxon OID3300012054 Open in IMG/M
Scaffold IDGa0154007_1000210 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from North Carolina, USA - TSNC091 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9347
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Connecticut, Klassen Lab
CoordinatesLat. (o)41.8102Long. (o)-72.2564Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000977Metagenome815Y
F003619Metagenome476Y

Sequences

Protein IDFamilyRBSSequence
Ga0154007_10002103F000977AGCAGMTSRQQIKSLSVTSDPITAGLSQEMDALPDDNHIADARSHWHVFLSHIQSRRKLVRSLENGGQK*
Ga0154007_10002104F003619GAGGVNVFYHIPYSFMRQDAAVAWTTFYGVADLKSLASYQLRSYHIYKVWYGGVDEGLIECGKAHEWFTGYSTSELVTVCKGRHLRDTMWIGSRSSPYHSFYT*
Ga0154007_10002106F003619GAGGVNVSYHISYSFIRQNAAVTWTTFYGVAGLKSLANHRLRLYHTYKVWCGGVDEGLIECGKAHEWFTDYSTSELVTVCKGEHLKDTMRIGSRLSSHYPFYT*
Ga0154007_10002107F000977GAGMTSRQQIKSLSVTSDFITARLSQKIDALLDNNCIADAQAHCYVFLDHIWSRRKLVWDSENDRQK*
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