NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0154007_1000427

Scaffold Ga0154007_1000427


Overview

Basic Information
Taxon OID3300012054 Open in IMG/M
Scaffold IDGa0154007_1000427 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from North Carolina, USA - TSNC091 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7734
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Connecticut, Klassen Lab
CoordinatesLat. (o)41.8102Long. (o)-72.2564Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004107Metagenome452Y
F015423Metagenome254Y
F016095Metagenome249Y
F078054Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0154007_100042710F004107GAGGVLDRSVSDGVNCRGFSAGENGGFTKVSTGGTEAGLWSRDSGRKDIDPETQSINGL*
Ga0154007_100042711F015423AGAAGMHSPKRNFTGNHTTSEIILFEVPSNRHSSTGGVGVVGSKCSRAKAESKKQCVDPESTSVQMGIGWRWSGAHIRGETRGIQREFGLERADALRRIGLIVAQTSSTRLPVCAESWEPRSSFLRGSQRAESLDPLE*
Ga0154007_100042713F078054GAGVAGFTSWNSEGSTRVRGVPDWRRLDLLRRPEVKQLMVRSAKGMELLPEEGAED*
Ga0154007_100042714F016095AGGAGGMKRTHARTRRLKTTVSVYDPSKRSRPDHCARKGRRSRVSQCLGGAPYHHYGLARIGNSEVFFVSLSLLSLCFVIIIKYSRAQEGNQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.