NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0154007_1000535

Scaffold Ga0154007_1000535


Overview

Basic Information
Taxon OID3300012054 Open in IMG/M
Scaffold IDGa0154007_1000535 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from North Carolina, USA - TSNC091 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7304
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Connecticut, Klassen Lab
CoordinatesLat. (o)41.8102Long. (o)-72.2564Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000523Metagenome1050Y
F003619Metagenome476Y
F018840Metagenome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0154007_10005353F018840N/ALSPSTPPDEEMNLIDLPPLTKRQCIQYLPKEIPEACQQHEELAREMGMSVVGGGSPCERCPDFGILCIPQTLL*
Ga0154007_10005354F000523N/AVIAKPERRLWWTGKNVRAENNLLNDLGFNLCVVPQSPVVRLVTYFRVRKIVKTEVLSGQVEELERIR*
Ga0154007_10005355F003619GAGVNVSYHILYSFMRQDAAVAQTTFYGVAGLKSLADYRLRLYYIHKVWCGGADEGLIKCDKAYKWFTDYSTSELVMVCKGEHLRDTMWIGSRSSPYHSF*
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