NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0154007_1000871

Scaffold Ga0154007_1000871


Overview

Basic Information
Taxon OID3300012054 Open in IMG/M
Scaffold IDGa0154007_1000871 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from North Carolina, USA - TSNC091 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6215
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Connecticut, Klassen Lab
CoordinatesLat. (o)41.8102Long. (o)-72.2564Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000383Metagenome1208Y
F001585Metagenome667Y
F002648Metagenome539Y
F057804Metagenome135Y
F058578Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0154007_10008711F001585N/ALGSAVGDNTFWEAVELLDMVKKESGCSFRCDRCVHRNKVYSLGDGIYNSHDSVMSGGLREFDHKIDTEHIPLCIQNGKQLKLTNWGVSPGFHLEAEITGTYILANIPRHLRPPVVLGHQF
Ga0154007_100087110F057804N/AMSMGIPPDGIGGDRGGLGRTEGRAARGEQSIDKGVGQVGVEHAGVTVVDQSMDWNTSFANCAWSILWAAAYQASRSVLAGCLKGMVVI*
Ga0154007_100087111F002648GAGGLDHFTARPFLKKARVQKIFSLSQVNCSRARCKYNVQELRKARPELCLLEKLQGEGSFGLIRYLDRTAGTREGGVTGRRDMGIRGEVTAGAGARPVMS*
Ga0154007_10008717F058578AGGAMIQKEQVSRKRMETRALNVCQSEPPPEYAEDSEEDKIPIRTHEAEYEQGDRLFMIRILLESTAEDLRAASTTSQKLAEGAHQSVEAWREPFILPNCVRGFESVFAEEDFDILPEHRQ*
Ga0154007_10008718F000383N/AVASFISRRALVHLYFSGLPIDLWVVVLEPGITEDHVLPSEARDSKERPFRVGFVTEDYIYYFGDLTCLVGGAIHIVYQYGVRDALGINTFHTDEVSIYEVARSSGVQKCLDGMHLTGVCGADFYWKDDRRSAGVEGIDRKSFG*
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