NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153995_1020099

Scaffold Ga0153995_1020099


Overview

Basic Information
Taxon OID3300012057 Open in IMG/M
Scaffold IDGa0153995_1020099 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from North Carolina, USA - TSNC079 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1224
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: North Carolina, Lumber River State Park
CoordinatesLat. (o)34.3888Long. (o)-79.0011Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013385Metagenome271Y
F059521Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0153995_10200991F013385N/AMLIPLAPRLSLLVLVSLQTHSILFLVPALGLVNAFIPKDAFMLVALSDAPLGVFQLLRTLGKHLLSPLLPLRRRKVKRRRSVLAPGHLLLLGSLQASSLTELPLSSSLLLPLSLLLKGEHIL*
Ga0153995_10200992F059521AGGVTMTAYLRCHKPVTSNIVTPDVTPDCDLWDGEHHVTSLSGHFGYLENDAKVLASSVLRIARFIQKHPIRNRPIEQFPPILGAGSIMWHLFQTVSAAGWDRFKISPQPDSPSLVEAMRTLYGPNLPQEPSLDTEMAVDQPAVEEAPFTTVTNKKSKGKGKVPPSTN
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