NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153991_1008317

Scaffold Ga0153991_1008317


Overview

Basic Information
Taxon OID3300012059 Open in IMG/M
Scaffold IDGa0153991_1008317 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from North Carolina, USA - TSNC075 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2417
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: North Carolina, Jones Lake State Park
CoordinatesLat. (o)34.5814Long. (o)-78.4485Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005168Metagenome409Y
F072920Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0153991_10083171F072920AGCAGMAIRTGLIPAMEIDNIYDITVITDSITAARKILESKVDPLQNMFIPLAAAVKTFLSKDGRNKIRFWYCPSRAEWPRHKLVDDQVKASSCAPTFPSKESHLFSKKKECDNTLCEWQTYFANSLKKGHYFLN
Ga0153991_10083172F005168AGGMLVKVLIRGRRRGVKANSTREMINYLRSRGKEGVKGVEAVSNAVELLIDVLDRALEVGLLFHSEFGSCSFVGSLILGMLGI*
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