 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012069 Open in IMG/M |
| Scaffold ID | Ga0153965_1000111 Open in IMG/M |
| Source Dataset Name | Attine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14300 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (22.22%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida, Paynes | |||||||
| Coordinates | Lat. (o) | 27.6228 | Long. (o) | -81.8094 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006011 | Metagenome | 383 | Y |
| F017769 | Metagenome | 238 | Y |
| F050816 | Metagenome | 144 | Y |
| F059521 | Metagenome | 133 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0153965_10001112 | F006011 | N/A | VTLSSVKERQEQDVTVVDHISSQAKSKSRETRVNKSHNSRNILRVLRNSDHLGPVRVNRSTHYLVSFQRDSGGSIIDKVPGRFLDKENIIVVLLRLKKSINQRIVLANVL* |
| Ga0153965_10001113 | F050816 | GGA | MHVTLKALSARNVVGHTEWKTTDLWLGVARPIPSPTLLERLLQLVLHALTPSSV* |
| Ga0153965_10001116 | F059521 | N/A | LSGYFGYLENDAKVLALSVLRIVRFIQKHPIGSRSIEQFSPILGAGSIIWHLFQTVSAAEWDRFKGLPQPDSPLLVEAIRTLYGPNLPQEPSSDTEMAVDQPTVEKTPFTTVTNKKNKGKGKVPFFTNPSAPSQNVPTPAPVVSRAPPSPLLAKTATAKPTPTKVAIKP* |
| Ga0153965_10001118 | F017769 | GAGG | LTKGPGGTNHPRGKAPALLSRNLVIPTHGMCSPFRSRRRGSSRELEKGNSVKKLAYNDPRGSRCPGTRTDLLLFTFLLLRGRRGLKRCFPRVLSS* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |