NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153965_1000610

Scaffold Ga0153965_1000610


Overview

Basic Information
Taxon OID3300012069 Open in IMG/M
Scaffold IDGa0153965_1000610 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8489
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Paynes
CoordinatesLat. (o)27.6228Long. (o)-81.8094Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039894Metagenome162Y
F050815Metagenome144Y
F062321Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0153965_100061010F062321AGGMQPELLFKFSLGLDGKNAGVCFLTKYVFGLLGSTTSLEEREGPENPFLFVLELLRG*
Ga0153965_100061011F039894AGGAGMKQYLSKILSQDISRVPGSINVIWFDFVILYCIPNIVILDINMFGPFFLHWVGAPEK*
Ga0153965_10006108F050815GGGGGMDMDVTRKARSLPLRGCYQYGDANHVVRDCPYRLDVRQLTMGQQEELIKELLVLKDAVPIEESCPSEKKDFA*

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