NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153965_1005715

Scaffold Ga0153965_1005715


Overview

Basic Information
Taxon OID3300012069 Open in IMG/M
Scaffold IDGa0153965_1005715 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3263
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Paynes
CoordinatesLat. (o)27.6228Long. (o)-81.8094Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006011Metagenome383Y
F029617Metagenome187Y
F049333Metagenome146Y
F050816Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0153965_10057152F006011N/AVTLSSIEERQEQDVAVVNHISSQAKPESRETRVNKSYNSRNVLRVSRDLDHLGPVRVNRSTYYLVSFQRDSRGSIANKVPGRFLDKEDIILVLLRLKKSINQHIILVNVLQINV*
Ga0153965_10057153F050816GGAMHVMLKALSARNVVDHMEWKTTDLWLGVARLIPSPTLLERLLQLVLHALIPSNV*
Ga0153965_10057154F029617N/AMFSDLLIEKVLAMHQSGFGASASPNRGGAVHSGASRAPKMTTHRPTRCQVLIPLDTPTAEVIVANAAITVESCNRGLVEAYSKLKVELVHKAWDGISMSTNFIASAAELEVIKQWLKKVAGLTASTMIEPCLP*
Ga0153965_10057155F049333N/AVATFVGVGLTVAILAGRDGGGALNITGAEVGTFWEGVEGLVEGGTLPLPLVFLLVTVVKGASSTAG*
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Institute for Fundamental Biomedical Research
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