NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153965_1009952

Scaffold Ga0153965_1009952


Overview

Basic Information
Taxon OID3300012069 Open in IMG/M
Scaffold IDGa0153965_1009952 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2406
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Paynes
CoordinatesLat. (o)27.6228Long. (o)-81.8094Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002648Metagenome539Y
F006537Metagenome370Y
F057804Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0153965_10099521F002648N/AMPVSTSWQKRFSDHFTACLSLKKVRVQKIFSSSQVNCSRAKHKYSVQELRKAGLELHSPEKSEGERSFGLVRCLDEADRTGEGGLTDGGDVGIGGRATVGVGAVMS*
Ga0153965_10099522F057804GGAMSIGILLDSADRGRGSLGGTEGRAAGGEQSTEKGVGRAGVEHAGVTVVDRSMDWNASFANHAWSILRAAVYQASKSVSAGHPKGMVAI*
Ga0153965_10099523F006537AGCAGMDIDAVRKTCSLPPRGCYQCREANYLVKDCPYHLDVQRLTMEQRKELIEDLMALKDVVEEEEVCSAPEEGFV*
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