NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0153979_1006401

Scaffold Ga0153979_1006401


Overview

Basic Information
Taxon OID3300012073 Open in IMG/M
Scaffold IDGa0153979_1006401 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Georgia, USA - TSGA063 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2748
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Georgia, Magnolia Springs State Park
CoordinatesLat. (o)32.8826Long. (o)-81.9512Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011465Metagenome290Y
F026754Metagenome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0153979_10064011F026754N/ATLVDVLAQILDSSQSSRDLNIEMTIKEKKKLRTVGDHILISESGPIAFKYQAIVRPSIEWITVLSSICSLFILLRKVFTTFSIDHTLGLGIVNTTWTIEHIFGDFCKEKWL*
Ga0153979_10064013F011465AGGGGGMGGIQEFKSIVLNLENKRRMQDKEMERNGLAHRWCLINATMPIVFMSEMVLSHLSSMVESSSSSLLLMHGQLVSRENLTGLGHINILLYLSSTRDYRILLYMIDMMMKMLGLWDTNSFFPLLMWGVLGL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.