NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153924_1000103

Scaffold Ga0153924_1000103


Overview

Basic Information
Taxon OID3300012089 Open in IMG/M
Scaffold IDGa0153924_1000103 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from New Jersey, USA - TSNJ008 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62532
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (60.56%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: New Jersey, Wharton State Forest
CoordinatesLat. (o)39.7086Long. (o)-74.664Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F095037Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0153924_100010368F095037AGGTGGMIELPERTRRISPSRVHEILLAHDCKSVVDPFMGLPTHLNYLKRHGIAVHGGDLLEWFVRAGEGIITNDLTILRDSEVAELVEMLPGRIYSLDLFKAWEGVFFSEEQCVYLGVWHDNVHNLRSDQQTGLAILGLWRVFCYWLQKAQTPDDMQDVPPSELAWSYIRQTEQWVTPNLRHNTVRQGDVLATMGAQKADALFLAPPARNSFRSADARIWMWEAWWQGNPYFTIEHAYRDSLLGARAADPAAYARAMQTILSAAESYSVIIVQTTEQRLSEIEPIVTSARANVEIVAPHPFEIYLVATT*
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