NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0136632_10031227

Scaffold Ga0136632_10031227


Overview

Basic Information
Taxon OID3300012093 Open in IMG/M
Scaffold IDGa0136632_10031227 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2421
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.1266Long. (o)163.9666Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003229Metagenome / Metatranscriptome499Y
F006197Metagenome379Y
F049417Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0136632_100312272F049417AGGAVREEEIMQIIPGPRGWYAYGQDEQGVEFLAPVACWALVESSSNVHRVVGLGAHGLGSVSRVEDLPGFVEYRYVPEEGGS*
Ga0136632_100312275F006197GGAGGMRPFVALGKPMRLVGGTGPSREVRLQPGYSLDLSDPGVLVLRCPHGTAAAHFSARGAAAEAIEQEARMHYRERNRSA*
Ga0136632_100312276F003229AGGAGVQHHPKPPTIAILGADTVVGRALCALLEGSGYQTRPLDAFPTGVVDELLEGTHLLLLVPRLDEGVREAFLGAMGKSTPQKASMPVIALSTIVEEGLPEKEGVLSVTWPCETKVLVDQIEAALLDVPAASAGSTTSTTQARTG*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.