Scaffold Ga0153986_1015444

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153986_1015444

Scaffold Ga0153986_1015444

Overview

Basic Information
Taxon OID	3300012105 Open in IMG/M
Scaffold ID	Ga0153986_1015444 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA070 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	794
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: Georgia, Alexander Wildlife Management Area
Coordinates	Lat. (^o)	33.0113	Long. (^o)	-81.8995	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004810	Metagenome / Metatranscriptome	423	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153986_10154442	F004810	AGGAGG	VLNLLMLASGVGLVAATAALWVQGWRRADHRFFAGLISIAVTLSLFSVVAWAATAIAPLPLTWVLVGTLALLFALRLYRQLQVPPPGERSP*

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