Scaffold Ga0136565_1020302

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136565_1020302

Scaffold Ga0136565_1020302

Overview

Basic Information
Taxon OID	3300012121 Open in IMG/M
Scaffold ID	Ga0136565_1020302 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Deep lake, Antarctica - Metagenome #1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	768
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Deep lake
Coordinates	Lat. (^o)	-68.5558	Long. (^o)	78.1913	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030942	Metagenome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136565_10203022	F030942	AGGTGG	MSHAVLKNENDRIVQIQKNGEIVWNDEDYVQRPKIGEPTAQMLRDAETIQDIKQYLAKVHKIDLSGGSE*

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