Scaffold Ga0154006_1018432

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0154006_1018432

Scaffold Ga0154006_1018432

Overview

Basic Information
Taxon OID	3300012125 Open in IMG/M
Scaffold ID	Ga0154006_1018432 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from Florida, USA - TSFL090 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1098
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: Florida, Wakulla State Forest
Coordinates	Lat. (^o)	30.3423	Long. (^o)	-84.2548	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022125	Metagenome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0154006_10184322	F022125	AGGAG	LEVEESIWKKGVRKDASTKDLGPYHRIKEGIYTKKGESILIIKRGKRGSTDICRRPVEKGIYPTLQVTPDITSTLCGEKGWHTENGTRLLTYKSVDNKKWVPFTPHCRYIGWSRKEKGVYEVGFKMGIQ*

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