NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153961_1000811

Scaffold Ga0153961_1000811


Overview

Basic Information
Taxon OID3300012139 Open in IMG/M
Scaffold IDGa0153961_1000811 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL045 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7874
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Withalacochee
CoordinatesLat. (o)28.571Long. (o)-82.2846Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001585Metagenome667Y
F035142Metagenome172Y
F058578Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0153961_100081111F001585GGAGVELPDMVKKEFGRSFRCDHCVRRNEVYSLGDGVYYSHDGVMSRELQEFNHEIDTEHIPLCVRNRERLKFANRRVSLGFRPEAEITGAHILTNIPRYLRPPVVPGHQF*
Ga0153961_10008112F035142GGTGGMSQSVLTFGQLLEIVLQVAQGVSNSWGGVHRERHLSWSGVIRGPEFVSRERQEGSCPLRNSGALARRSNSAVRATEVDSRRFLS*
Ga0153961_10008117F058578AGGAVIQKEQASRKRIETRALNVCQSGPCPEYVEDSEEDEAPIRTREAEYEPGDRLFMTRILPDSTREDLRTTSTTSQKLAEGACRSTEARKEPFIPPDCVREFESIFAKEDFNILPEHRQ*
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