NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153961_1000872

Scaffold Ga0153961_1000872


Overview

Basic Information
Taxon OID3300012139 Open in IMG/M
Scaffold IDGa0153961_1000872 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL045 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7582
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (53.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Withalacochee
CoordinatesLat. (o)28.571Long. (o)-82.2846Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000383Metagenome1208Y
F001585Metagenome667Y
F029613Metagenome187Y
F039422Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0153961_100087212F000383N/AMVFFISRRTSVHLHFSSLSIDLWVVVLEPGITEDHVLPSEAGDSEERPFGVGFVIKNHVYYFRDLTCLVGAAVHVVHRYGARDAPGVNAFCSDEVSIYKVACSPRVQKRLNGMHLAGVCGADFYWQDNRHPMSIEGVDRESFG*
Ga0153961_10008724F039422GGAGGMFRVLIEKSLGSLFSHLGLWSRAEIREIEGGASTSSLSIVLGSSIVNTVNLFTGDRGALITSRATQNSLPLGDKTLLSELHLSTPIDLQSTPPAASW*
Ga0153961_10008726F029613AGGAGMLRGNGRCSRVMCERSPYIYPSSKVAASRSNGSGIENGVEVSLADVSWGSWVLLVVLHDKVRCLDIRDYLPRVVFSAKTLPLDQELEPPLVPATI*
Ga0153961_10008728F001585GGAGVVKKESGRSFRCDRYVCRNEVYSLGDGVYDSHDGVMSRGLREFDHEIDTECIPPCVRNREWLKFANWRVSPGFRLETEIAGAYILANIPRHLRPSVVPGHQF*
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