NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153961_1000948

Scaffold Ga0153961_1000948


Overview

Basic Information
Taxon OID3300012139 Open in IMG/M
Scaffold IDGa0153961_1000948 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL045 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7266
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Withalacochee
CoordinatesLat. (o)28.571Long. (o)-82.2846Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001569Metagenome669Y
F002577Metagenome546Y
F019419Metagenome229Y
F025891Metagenome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0153961_10009481F002577GGAGLEAVQIVVHHPIFLVVGSLFQTIDRVHFHVCREEVQPELLFKFSLGLDGENASVRFLTEYVFGPLGGTTSLEEHEGPEDPFLFVMELLWG*
Ga0153961_100094812F025891N/ALLEGRSIRYPIWGAWASVYEVYVAVVTAATLLLELDAQVHD*
Ga0153961_10009482F019419N/AMSMGTLIDRVVSRGFGMTRGGGARGNLAADNGRGQTETVLSDVEGAERDTDWKALFARHAWSILLAALYHVSGLVSAGHS*
Ga0153961_10009484F001569N/AMVLEPGVAEDHALLPEVRDSEKHPFRVGFIMEDHIYHFRDLSSFVRGTVHIEHWYGARDVLGANTLYTDKIFIYEIACGSRVQKRFDRMYFASVSGTDFDREDNRRFVGIEGVGGESPG*
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