NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153961_1005432

Scaffold Ga0153961_1005432


Overview

Basic Information
Taxon OID3300012139 Open in IMG/M
Scaffold IDGa0153961_1005432 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL045 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2939
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Withalacochee
CoordinatesLat. (o)28.571Long. (o)-82.2846Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022328Metagenome214Y
F078054Metagenome116Y
F104168Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0153961_10054321F104168GGAGMSEKNILSDDIKKAPADCQGRRSGEQLIERPWLQLMCCAPVSGREVGRVFRSEESRQNRSPKELSEGSRVGKVRLGRDDVNLQTEELHCNYSVLIGSPE*
Ga0153961_10054322F078054N/AVAGSTPWNSEGSTGGGDEWGRTGVRGVPDWRHLDLLGRPEVKRPIVRSARGMELLPEEGAADWRDIRVKTRQEPV*
Ga0153961_10054324F022328GAGGVDGDGDLTMEDSRLEGFWELQDGAVCGGVVDDWGQDGAELCEEAEY*
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