NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0153961_1017374

Scaffold Ga0153961_1017374


Overview

Basic Information
Taxon OID3300012139 Open in IMG/M
Scaffold IDGa0153961_1017374 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL045 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1466
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Withalacochee
CoordinatesLat. (o)28.571Long. (o)-82.2846Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008009Metagenome340Y
F015953Metagenome250Y
F029617Metagenome187Y
F050816Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0153961_10173741F015953N/AEVALTTPSRIANNSASRAVARPAGALDDDTCSPSLQKWATETACIFLGGITLASVATTSVDESEEAS*
Ga0153961_10173742F008009AGGAGGMTKSVKGVKLEFASAPIGAVTGMERDLIRKVVQQPASWVYLRVE*
Ga0153961_10173744F029617AGCAGMVARRERRGAVHPGASRAPKMTTHGPTRHQVLIPLDTPTTEVVVANAATAVESCNRGLVEAHSKLRVESVRKTWDGISMSTNFVASAAELEVIKQWLKKVAGLATSTVVEPRLPQSKSFLKILGVPY*
Ga0153961_10173745F050816GGAMHVALKTLSARNVVDHTEWKTTDLWLGVARLIPSPTLPERLLQLVLHA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.