NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153996_1003493

Scaffold Ga0153996_1003493


Overview

Basic Information
Taxon OID3300012144 Open in IMG/M
Scaffold IDGa0153996_1003493 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from North Carolina, USA - TSNC080 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5404
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: North Carolina, Lumber River State Park
CoordinatesLat. (o)34.917Long. (o)-79.3533Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001569Metagenome669Y
F002193Metagenome584Y
F002648Metagenome539Y
F006537Metagenome370Y

Sequences

Protein IDFamilyRBSSequence
Ga0153996_10034932F002648GGAMLVSASWRKRFSDHLAARPSLKKASVQKIFSSSQLNCFRARHRYNIQEFKKVRLEVRSLEKSGGEGSFGLVHCLVGADGTGEGGLTGGEDVVNGGRATVGAGAEVVIS*
Ga0153996_10034933F006537GGAGMDVDTVQKTCPIPPQGCYRCEEPNYLMKDCPHHLDVQSLTAEQREKLIEDLMALKDAVTEEEVGSSLEEDFV*
Ga0153996_10034934F001569N/AMVLEPGITEDHALLPEVRDGEEHPFGVGFITEDHVYHFRDLSGFVRGTVHVEHWYGARDVPGANTLRTDKIFIYEIACGSRVQKRFDGMYFASVSGTDLYREDDRRSADIEGVGGESSG*
Ga0153996_10034939F002193GGAGMEFPDMMEEESGCSFRCDRRVRRNEVYPFGDSIHDCHDGVMSRRLREFDHKIDTECIPPCIWNGEQLKLANRRMLPRFHPEAEVASTHILADVPRHLGPPVVPGH*
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