Basic Information | |
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Taxon OID | 3300012144 Open in IMG/M |
Scaffold ID | Ga0153996_1006601 Open in IMG/M |
Source Dataset Name | Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC080 MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3564 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (45.45%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: North Carolina, Lumber River State Park | |||||||
Coordinates | Lat. (o) | 34.917 | Long. (o) | -79.3533 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000383 | Metagenome | 1208 | Y |
F035142 | Metagenome | 172 | Y |
F049332 | Metagenome | 146 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0153996_100660110 | F035142 | GGTGG | VFRSVLMFGQLLEMVLQVAQGVSDSWGGVCRERHLSWSRVIRGPEFVSGGRLEDSCSLRNSGALARRSNSAVRATEVDSRRFLS* |
Ga0153996_10066014 | F049332 | GGA | METRALNVCRSGPCPEYAEDSEKDETPVQTWEAEYEPEDRLFMTRILPDSTAEDLHTTSMTSQKLAEGAR* |
Ga0153996_10066015 | F000383 | N/A | LFLSYHAASFISRGTSVHLYFSGLPIDLWVVVLEPGITKDHALPSKAGDSKEHSFGVGFVMENHVYHFRDLTCLIGGAIHIVHRYGARDAPGVNAFRSDEVSIYEVARGSRVQKRLDGMHLAGVCGTNFYREDNQRSTGVEGVDGESFG* |
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