NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153996_1008809

Scaffold Ga0153996_1008809


Overview

Basic Information
Taxon OID3300012144 Open in IMG/M
Scaffold IDGa0153996_1008809 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from North Carolina, USA - TSNC080 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2939
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: North Carolina, Lumber River State Park
CoordinatesLat. (o)34.917Long. (o)-79.3533Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018112Metagenome236Y
F022328Metagenome214Y
F057022Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0153996_10088091F057022AGGAGVIVRNHTPFRSNVQCRGEVYLAMIERRLQRRYKDVGAESDLLNDLGFNLYIAPRSPVVRLVAYFGVKEVVETEVLRSRVKELEWTR*
Ga0153996_10088094F018112AGAAGMHSPEGNFTGNNTTSEIILFEVPSNRHSSTGEVGVVGRERPRAKAESKKQCIDPESTSVRMDIGWRWSRAHTRGETRGIQREFRSERADVLRRIGLAVAQTSSM*
Ga0153996_10088095F022328GAGGVDGDGDLVMEDGHLEGFRELWDGAVCGGVIDDWGQDEAELCEEVEY*
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