Scaffold Ga0153996_1027278

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153996_1027278

Scaffold Ga0153996_1027278

Overview

Basic Information
Taxon OID	3300012144 Open in IMG/M
Scaffold ID	Ga0153996_1027278 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC080 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1377
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Phallomycetidae → Geastrales → Sphaerobolaceae → Sphaerobolus → Sphaerobolus stellatus → Sphaerobolus stellatus SS14	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: North Carolina, Lumber River State Park
Coordinates	Lat. (^o)	34.917	Long. (^o)	-79.3533	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001569	Metagenome	669	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153996_10272781	F001569	N/A	MVLEPGVAKDHALPPEIGDSEECPLRVGLITENYVYHFRDLPCFIRRATHIEHWYGARDVPGTNTLHTDKVSVYEVACSPRVQKHLDRIYLTSVSGTDLDRKDDRHSAGIKDVGRELSG*

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