NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137334_1047144

Scaffold Ga0137334_1047144


Overview

Basic Information
Taxon OID3300012179 Open in IMG/M
Scaffold IDGa0137334_1047144 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT262_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)910
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9226Long. (o)-106.9511Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000825Metagenome / Metatranscriptome874Y
F027433Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0137334_10471441F000825N/AMLAALAAMTGAALAMDAVPAQAQSSWKSWVVKELGFSFMAPGKVEVSTGSFRGAVAGPRQTMIFKSVVDNIEYKVTVMSFLQAQAEGGSILGERTFMFQQDRKVLMDTFARVEPGKDSVYGRKMVVEHPDNKGRTMGAFFFHKGKLIAMEGTVLPANGDYESPDPARFIDSIVFVLSRTGEGAIELQAPK
Ga0137334_10471442F027433N/AFMFQNGNGKKVLMDAFGRVDRQYGRKLTVDLPNNGGRSMGAFYFINGRIVSLQATVLPANGDYETPETGRFIDSITFSPVRAADDAIELPPPG*
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