NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153974_1097318

Scaffold Ga0153974_1097318


Overview

Basic Information
Taxon OID3300012180 Open in IMG/M
Scaffold IDGa0153974_1097318 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)666
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Georgia, Yuchi Wildlife Management Area
CoordinatesLat. (o)33.0837Long. (o)-81.7708Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036338Metagenome170Y
F061732Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0153974_10973181F036338N/AGASLYVPGSSQIRVNYPSAGTSPDFGPRPEHLQLLHDPKWGKLFDSGFHCDRAGTVPLAMLAVFLEAKIALTLVQPEASANKVIRSNK*
Ga0153974_10973182F061732N/AMNSDRVFADAIKAAQRLLWHTYDLPDAMKVAGLRKLVRSSTVQSALQCSSDTLLAFTLSAVELVIADQSRTDREMI

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