NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153922_1024272

Scaffold Ga0153922_1024272


Overview

Basic Information
Taxon OID3300012181 Open in IMG/M
Scaffold IDGa0153922_1024272 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1369
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: New Jersey, Brendon T. Byrne State Forest
CoordinatesLat. (o)39.9181Long. (o)-74.5218Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006171Metagenome379Y

Sequences

Protein IDFamilyRBSSequence
Ga0153922_10242721F006171N/AARIVLHMLFFIIFCCFQRERMDGIQEFQFVVLN*VNKERIEDREMKKNGLAHRWSLIHIIMSITFMSEMVLSHFSSIVESYFSSLLLMHRQIVNRGNSIGLEHINILSDLSSIRDYRMLLCMIDIIEKMLDVWDTNLFFLLLM*
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