NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136619_10015863

Scaffold Ga0136619_10015863


Overview

Basic Information
Taxon OID3300012185 Open in IMG/M
Scaffold IDGa0136619_10015863 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ353 (21.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2941
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.0624Long. (o)163.8323Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029351Metagenome188Y
F049355Metagenome146Y
F055429Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0136619_100158633F049355GGAGGMSGCSGIKADGGRCRAQAITDSQWCFNHHPGYEQQRRLRASKGGKRGGRGRPQAELAEVKSILRGLAGSVLKGTSDRQDAAVVGQLLNTVIRAVSVELKAKEQLELVERLEMLEEALEQRKGEHRYGA*
Ga0136619_100158637F029351GGAVDVARADTVNAELERLISRRASQDTPDPAEQSALWKASVQRHNARRREENRQAWAAFHEGQAASLRQTLENLIAEHEAKAMKLLRGA*
Ga0136619_100158638F055429GGCGGMTEGNLKRLVLDYRNGELVLRVLYRRSLQDGPNPGTKARAREVSRLARSGLQDALRALEGDVECVGTSGFSTREDILLATTSPDADKLVKGA*

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