NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136622_10177552

Scaffold Ga0136622_10177552


Overview

Basic Information
Taxon OID3300012187 Open in IMG/M
Scaffold IDGa0136622_10177552 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ448 (21.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)898
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.0824Long. (o)163.7502Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011811Metagenome / Metatranscriptome287Y
F091927Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0136622_101775521F091927GGAGLFFTRFQGEGDNPFKDHDFGESYVVLYKRGDAALPIEMQLSLAVARGGFGMRAPIGLLIVGVLVPPLLPAVLDHLRIHRVGLNLEPVVVRPAMPLALRLAANALLDSIRGWRKASLAVRTAAGLGQYVSSEIERDSNF*
Ga0136622_101775522F011811GAGGMLTTEQINDLHRLYWSEHWPIRKIERPLHMGWDTIKKYLDMPAQTPAGRPRSSKL

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