NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137388_10131480

Scaffold Ga0137388_10131480


Overview

Basic Information
Taxon OID3300012189 Open in IMG/M
Scaffold IDGa0137388_10131480 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2193
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015579Metagenome / Metatranscriptome253Y
F035244Metagenome172N
F097102Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0137388_101314802F097102GAGGLEIEVYNCGCKIRIYEVEFGESKNDLTERPSLISDYSPCSKHRYARKIPPREARLLKVQGEHEAFLNE*
Ga0137388_101314803F015579GGGGGLGSDSKKPPRPRHRFSFSGQTKQREGPAKPREANVTRNDILNSLTKYAHPQEGQVKEAVEIQDPVQVPDSDQRAVPARTRNRGSARGALVVFLGGFLAVWLYGYATGAYEIPYLRGVTESPEVQVGAQLVSSSPILFGAVSVSVLLGALYLRHRKKN*
Ga0137388_101314804F035244N/AMSKCDSVNFPRINLISLLAGALALASLFLPWWGLDASGFGSSVSPRWTLWNGPSMDSIFRGSTQPYPTLTSASPIIGALVVISALLALAGSFTRNIRPLIGSFILNVLIPIAYLGVVSYAVTNSCNGQSNCLSGPFGTETVFGITLNWGFQIGFYLYVVAGTLTLVGLGFHRIFHKTIPSTQKSSPQPSMSTS*
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