Scaffold Ga0137383

Basic Information
Taxon OID	3300012199 Open in IMG/M
Scaffold ID	Ga0137383_10000005 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012199 Open in IMG/M

Scaffold ID

Ga0137383_10000005 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	66186
Total Scaffold Genes	71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (64.79%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

66186

Total Scaffold Genes

71 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (64.79%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.5673	Long. (^o)	-123.4758	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.5673

Long. (^o)

-123.4758

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001571	Metagenome / Metatranscriptome	669	Y
F006617	Metagenome / Metatranscriptome	368	N
F007968	Metagenome / Metatranscriptome	341	N
F021077	Metagenome / Metatranscriptome	220	Y
F023308	Metagenome / Metatranscriptome	210	Y
F031371	Metagenome	182	Y
F097057	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137383_1000000524	F007968	AGG	MRYILTVDFEDDIDIDSFLRFVAYHSKRLKCTSKDVFIRLAHEWEKQLVSTHEPTSPNGTKKEKKKTLKETSE*
Ga0137383_1000000536	F031371	GAGG	LSKGFGRWVYRLTLARWYYNYAWGWIIGYFLSTFSMIVTIYYLIPGLRDLFSFPVFLGGSGILLVGGGWVLGKLLAKRFKIQPIETYISSEVNPFTNAALTAKERVYWNAMVVFLKKEHARAPDAEVAKCVEQMNISIKGKVPFNFDELDNFDLGEEPEPQGPLTKDATKWSPPGEIKDGVSETPI*
Ga0137383_1000000537	F021077	N/A	MMVYLIRTAVPKLKFNKEYLQRLTKPIPKKEPGTKEATTAEVQAQPRHPTGFLQYCTNCGKSQMFRVDTLGWKTCTVCHGTAPDRSQSPI*
Ga0137383_1000000543	F006617	AGG	MAGAKPMLLWYVWIRLVDGAWHRLDDISKQLHLPKNAVEWAAKFLCDKGMAESGFEEGEIRLHQGGARFEDAVKALVPSTKPQHSGR*
Ga0137383_1000000550	F023308	N/A	MGTFLTLGTVLIGNWIGGYGFPLAWKTGGCPPPGIAISTSCLLAIAYDWLGFGLDILFYTAIGYGLLLAYAKYRSRQEEVERNHSDRLSQRILNKAGPMHRDLYLAL*
Ga0137383_1000000564	F001571	GAG	MISQVRQGPERVPERRLALVHRVIVPDKEYPKEYAILVTDRRSVFIRQRKTRRSFVLRYEMRIGTALVTDVIPKTLDDFEQTSVESLMADDSNLTVPHEAVVSLAMRAEEHERRRHDFFLWLVMRRQGEVFQVYDFEMKYRLGPHQDATVKFYMVPLGVYFKPRRQTQSRETILREYAADALEIFQKVLPPDCIFVA*
Ga0137383_1000000566	F097057	GAGG	LIDISDPVFWSTIAQTIVLTLTLVIFILSFRSQNNATREAAYQRALDDYTDSMKMLVENPQLSKLPMEMARANMPARAELQSQPPESMVVRNYMLLLYGIFERIHLLYRKKWIDSDTWNQWSLFLEAVTRHPAFRDVHRTSEGMFDKPFQDYVSNILSRKS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137383_10000005

Overview

Ecosystem & Geography

Associated Families

Sequences