NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137383_10006624

Scaffold Ga0137383_10006624


Overview

Basic Information
Taxon OID3300012199 Open in IMG/M
Scaffold IDGa0137383_10006624 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7547
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002993Metagenome / Metatranscriptome514N
F006078Metagenome382Y
F014244Metagenome / Metatranscriptome264N

Sequences

Protein IDFamilyRBSSequence
Ga0137383_100066244F002993AGGMAYGLAEGFRKTAVRLGGRKKSRAVVIATFGNHFTLNDALEKFRKEGLTFETEKGHVVKIFLDKNTKERAEQVRSIIRENFGYVEPL*
Ga0137383_100066247F014244N/AMVAFGEQTYTLLSEEARARGITIQELLRAVVIPDWFKAKYEPAPRQSPIIERRTREEEPVVPYSFSNKLRY*
Ga0137383_100066248F006078GAGGMQALKTAGLGAVTPIEPKVKVAPQSVFYALHTRDGTCASGCGVSQTGVAEIVFGVEIVEWDLCSVCLSRTGFLEYFNSLPPATLREAEEIKILLGISNETFERQN*
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