NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137383_10023581

Scaffold Ga0137383_10023581


Overview

Basic Information
Taxon OID3300012199 Open in IMG/M
Scaffold IDGa0137383_10023581 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4278
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016439Metagenome247Y

Sequences

Protein IDFamilyRBSSequence
Ga0137383_100235812F016439AGGMTRKLIVKKEIRTLGLDLCNPQRLVGAIVRGGVYIDGVEVFPSNPTLKSRSIGSAILETRFFPELRLIMTHDPETRLDINIIERLTKLPVIQVNSATKRNPNGFTRHKVGRKELQVKSSLLPRTLQEILSTTWTTGTLPEPLRIAHLLGKSRFFEKNMRFQANK*
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