NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137383_10871374

Scaffold Ga0137383_10871374


Overview

Basic Information
Taxon OID3300012199 Open in IMG/M
Scaffold IDGa0137383_10871374 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)657
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → unclassified Gemmataceae → Gemmataceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024750Metagenome / Metatranscriptome204Y
F067563Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0137383_108713741F024750GGAGGMKLTHDELEFLAAWAREECEPACYQLPSHQLQLAHGVSGAQLLVFIKAWTEDEGKKDLDILGAAANPQPRWPWPTAEDFSTRFASGAPLVPHGAVETGRRP
Ga0137383_108713742F067563N/ACPHPGCGQEIRDLLAEMVPSADQATPEFRALVGQTPGGAITCPYCQRAVEYDTDGETLVVSARTPFRYSRTKMALRSRDYGSQKSPPDMAMTPEQWIAEEKLMPGALQGYSYVEDGAP*
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