NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137382_10000112

Scaffold Ga0137382_10000112


Overview

Basic Information
Taxon OID3300012200 Open in IMG/M
Scaffold IDGa0137382_10000112 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33700
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (70.21%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003496Metagenome / Metatranscriptome483Y
F021501Metagenome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0137382_1000011240F021501N/AMKQRPLESLEDLILASLDQRALRERFGLPHPLSKFATDGTVKEGPCADAIIDFIKDWTCEAPESVKHGTAMWFLFDSERAFFVACSEAGIDAGRLRNHLRQRLSAEENE*
Ga0137382_1000011243F003496GAGMRLNQSLVNSDGDATQTLAYACTEPDCLVHYNIYRGYFILSQDGNTNELDMVPRVRCLHDGTPMYLAEADTKKSGFRLWICPQCDGRCTNEEGLIGLASQGIQDHLGGKNAA*
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