NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137382_10259197

Scaffold Ga0137382_10259197


Overview

Basic Information
Taxon OID3300012200 Open in IMG/M
Scaffold IDGa0137382_10259197 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1206
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F012223Metagenome / Metatranscriptome282Y
F019913Metagenome / Metatranscriptome227Y
F021376Metagenome / Metatranscriptome219Y
F090360Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0137382_102591971F012223N/AFFIFSGLAFVAFLAAGKAGHFHEVESDAVIALLVEEEDYYTPEWALEEEESADGNAER*
Ga0137382_102591972F019913GGAGGMPSGDSPQKAEEFYQYLLAHHETEHPVKTWHVDWMSLAWMWGFVAALSLILIWWIRQYRTTRQKPRIYSVDTWSGFTSELAGPSTLFFLLLTAILTGFAVALIVGHLVNGQIF*
Ga0137382_102591973F090360N/AMAAAPPFVSYSTMSEATVPASEWTYLYGSLQAYKAHVQEYPGCQKMELFAAIDDDGAMRVHCYTVWDTPEQLEVFLELGYTFERLLADLELAGVERSLVMEKLF*
Ga0137382_102591974F000280GAGGMPARPLAGYRDIGPDVRHSRRNHARAWIILAFLVAIYLGWTLIVYFLEPGLR*
Ga0137382_102591975F021376GAGGMWVQHLSSLDFLTYVAFFGVVVAVICRFVPGKAAPVRTEPYSEDELARHDARLVKYYVAGGGFLVLG
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