NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137365_10018260

Scaffold Ga0137365_10018260


Overview

Basic Information
Taxon OID3300012201 Open in IMG/M
Scaffold IDGa0137365_10018260 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5474
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022377Metagenome / Metatranscriptome214Y
F035422Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0137365_100182606F022377GGAGGMGPRTNLVAVLGHTAMIALLASLGTACLSCDDATGPQCGVQPHQPPPPTQVTYYRTNFNDGTTGPLDVYAYGGGSCIKSTDYTDPGSAYSMKCTVPPGTGAAALQAWFGQGRLSTLPKDPSLDRDLFEEVRFVFGPGAAGAVGGTSCDTTKNTNSQFKVHKSVYGQAGSAWNGWAMSQIGPCSDGNIGLFSEPEMWNVNGHTYPWPGTYPSLHEGSVYDVVYRYHRYTARNCGTIAIWVNGAKVIDSPCWTYMGTTNGSAAGLLFWDGATYLQNGLARFVVYTLFVQATNYPIGTASASP
Ga0137365_100182607F035422N/ASEIAPCSDGNIGLFSEPEMWNLNGQEFPWTGTYPSLHEGSVHDVVYRYHRYTAQGCGTIAIWVNGAKVMDSPCWSYMGTTNGSAQGLLFWDGATYLASGLGSLVVYNLLAQATNYPIGAGTASR*
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Institute for Fundamental Biomedical Research
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