NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137365_10018742

Scaffold Ga0137365_10018742


Overview

Basic Information
Taxon OID3300012201 Open in IMG/M
Scaffold IDGa0137365_10018742 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5395
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014368Metagenome / Metatranscriptome263N
F016387Metagenome / Metatranscriptome247N
F022177Metagenome / Metatranscriptome215Y
F029395Metagenome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0137365_100187422F014368N/AMTELESALKVEVRRSPDTVTRTFRIDRDVDRKMEGLSSEGRVSMNQMANKALRRYVEWEVNAEKFGTVTTSASTIRKFFDYLTIEQAKEMGSWWGENQAPGIITFWFKKFDFDSVLKALEFLGAQYGRAFTSDYAFDGRSHTLIVKHDMGLKASVFYAEAVKAAFSHLGLGTDIFVTDDQVIAISPPDPAHPLNRSYEGAADLKYPTSATSRPIPKLRKGQRTDSEPRDS*
Ga0137365_100187423F016387N/AMLELKPTPVSSSRSVTRTLRLDEDVEAGIVEMAEREQFSFNLLANRALRKLVEWEDKASKFGFIQVPTSLVEKVFSILSDEEARELGREAGTNTLPEMVLFWFKKFNPENALKAMEMIGSYGNAFRLQYTNDGETDTVVLKHDRGPRVSAFYGEMFQSLFKPMGAKVETLETDGQVVATIIRPLTGLASEHKDAPLILSFAGAKNGRGYKR*
Ga0137365_100187424F029395N/AMDAMLSSNEKREGLPHSEGREPETIDRLKDLLVDLIDSSKSLDARVWLDGVYTDISDEQVRGDWMNDRDVYFKVEGRVDKRNGS*
Ga0137365_100187425F022177GGCGGMSDIKNRIQENYQWTAYMKLKGQTWARREEEILDEFDSFVQSLRGVGVDYNIIVMVKGRVPRQVRCGYKTREAKAEAAREESGA*
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